Germany, who have already qualified for the 2022 FIFA World Cup in Qatar, were missing five players due to coronavirus isolation.
The German football federation said that the unnamed player was fully vaccinated and does not have any symptoms. Four others who came close to him have been put in isolation as a precaution.
Neither was part of the Germany squad that reached the round of 16 at this year's European Championship.
Flick's Germany became the first side to qualify for the 2022 FIFA World Cup Qatar after a 4-0 win in North Macedonia.
Flick takes charge of his first national squad as Germany prepare for their upcoming World Cup qualifiers against Lichtenstein, Armenia and Iceland
Julian Nagelsmann's predecessor, Hansi Flick, left after claiming back-to-back Bundesliga crowns, and a clean sweep of every possible title in his first season as Bayern Munich head coach
Germany have moved to replace outgoing coach Joachim Low with Hansi Flick, who will take over after Euro 2020.
Joachim Low's reign with Germany is drawing towards a close, with Hansi Flick seemingly set to replace him after Euro 2020
Julian Nagelsmann will move to Bayern Munich on July 1 with a contract that runs through 2026. Bayern said they agreed to terminate Hansi Flick's contract after he asked to be released early
Bayern Munich will be able to claim the Bundesliga title this weekend after going 10 points clear of RB Leipzig with four games to go.
Bayern Munich boss Hansi Flick is set to leave the club at the end of the campaign. We look at his tenure in more detail
Flick has been tipped to become Germany's next coach, but the Bayern Munich boss says that did not come up in talks with Oliver Kahn.
Bayern Munich are out of the Champions League and could be looking for a new coach after Hansi Flick again refused to commit long-term
Thomas Muller was honest in his assessment of Bayern Munich's Champions League quarter-final exit
Eric Maxim Choupo-Moting gave Bayern Munich victory on the night, but their Champions League title defence ended in Paris against PSG.
Kylian Mbappe has all the qualities to be crowned the best player in the world, according to Bayern Munich coach Hansi Flick.
Hansi Flick spoke to the media after Bayern Munich's defeat at home to Paris Saint-Germain on Wednesday.
In a repeat of last season's final, champions Bayern Munich host Paris Saint-Germain in the first leg of their UEFA Champions League quarter-final tie. Check match and telecast details
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